A National Platform for MicroArray Technology and High-Throughput Genomics
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The Norwegian Microarray Consortium A National Platform for MicroArray Technology and High-Throughput Genomics |
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NMC microarray-related publications involving project leaders and core facility personnel
2010 Arum CJ, Kodama Y, Rolim N, Widerøe M, Anderssen E, Viset T, Otterlei M, Lundgren S, Chen D, Zhao CM. A rat model of intravesical delivery of small interfering RNA for studying urinary carcinoma. World J Urol. 2010 Apr 8.
2009
Fernø J, Vik-Mo AO, Jassim G, Håvik B, Bergen K, Skrede S, Gulbrandsen OA, Waage J, Lunder N, Mørk S, Berge RK, Jørgensen HA, Steen VM. Acute clozapine exposure in vivo induces lipid accumulation and marked sequential changes in the expression of SREBP-, PPAR- and LXR target genes in rat liver. Psychopharmacology 2009; 203: 73-84 [Epub 30 Oct 2008]. Le Hellard S, Theisen FM, Haberhausen M, Raeder MB, Fernø J, Gebhardt S, Hinney A, Remschmidt H, Krieg JC, Mehler-Wex C, Nöthen MM, Hebebrand J, Steen VM. Association between the insulin-induced gene 2 (INSIG2) and weight gain in a German sample of antipsychotic-treated schizophrenic patients: perturbation of SREBP-controlled lipogenesis in drug-related metabolic adverse effects? Mol Psychiatry. 2009; 14: 308-317 Le Hellard S, Håvik B, Espeseth T, Breilid H, Løvlie R, Luciano M, Gow AJ, Harris SE, Starr JM, Wibrand K, Lundervold AJ, Porteous DJ, Bramham CR, Deary IJ, Reinvang I, Steen VM. Variants in doublecortin- and calmodulin kinase like 1, a gene up-regulated by BDNF, are associated with memory and general cognitive abilities. PLoS One. 2009; 4: e7534.
Vik-Mo AO, Fernø J, Skrede S, Steen VM. Psychotropic drugs up-regulate the expression of cholesterol transport proteins including ApoE in cultured human CNS- and liver cells. BMC Pharmacol. 2009; 9: 10. PMID: 19715613 2008 Boye K, Grotterød I, Aasheim HC, Hovig E, Maelandsmo GM. Activation of NF-kappaB by extracellular S100A4: analysis of signal transduction mechanisms and identification of target genes. Int J Cancer. 2008; 123: 1301-1310. Bye A, Høydal MA, Catalucci D, Langaas M, Kemi OJ, Beisvag V, Koch LG, Britton SL, Ellingsen Ø, Wisløff U. Gene expression profiling of skeletal muscle in exercise-trained and sedentary rats with inborn high and low VO2max. Physiol Genomics. 2008; 35: 213-221. Epub 2008 Sep 9 Eide IP, Isaksen CV, Salvesen KA, Langaas M, Schønberg SA, Austgulen R. Decidual expression and maternal serum levels of heme oxygenase 1 are increased in pre-eclampsia. Acta Obstet Gynecol Scand. 2008;87(3):272-9. Fernø J, Vik-Mo AO, Jassim G, Håvik B, Bergen K, Skrede S, Gulbrandsen OA, Waage J, Lunder N, Mørk S, Berge RK, Jørgensen HA, Steen VM. Acute clozapine exposure in vivo induces lipid accumulation and marked sequential changes in the expression of SREBP-, PPAR- and LXR target genes in rat liver. Psychopharmacology 2008 Oct 30 [Epub ahead of print]. Fjeldbo CS, Misund K, Günther CC, Langaas M, Steigedal TS, Thommesen L, Lægreid A, Bruland B. Functional studies on transfected cell microarray analysed by linear regression modeling. Nucleic Acids Res 2008: 36: e97. Hugdahl K, Løberg EM, Specht K, Steen VM, van Wageningen H, Jørgensen HA. Auditory hallucinations in schizophrenia: the role of cognitive, brain structural and genetic disturbances in the left temporal lobe. Front Hum Neurosci. 2007; 1: 6. Jakobsen CH, Gro Leite Størvold GL, Bremseth H, Follestad T, Sand K, Mack M, Olsen KS, Lundemo AG, Iversen JG, Krokan HE, Schønberg SA. Kresse SH, Skårn M, Ohnstad HO, Namløs HM, Bjerkehagen B, Myklebost O, Meza-Zepeda LA. DNA copy number changes in high-grade malignant peripheral nerve sheath tumors by array CGH. Mol Cancer. 2008; 7: 48. Larsen E, Kleppa L, Meza TJ, Meza-Zepeda LA, Rada C, Castellanos CG, Lien GF, Nesse GJ, Neuberger MS, Laerdahl JK, William Doughty R, Klungland A. Early-onset lymphoma and extensive embryonic apoptosis in two domain-specific Fen1 mice mutants. Cancer Res. 2008; 68: 4571-4579. Le Hellard S, Theisen FM, Haberhausen M, Raeder MB, Fernø J, Gebhardt S, Hinney A, Remschmidt H, Krieg JC, Mehler-Wex C, Nöthen MM, Hebebrand J, Steen VM. Association between the insulin-induced gene 2 (INSIG2) and weight gain in a German sample of antipsychotic-treated schizophrenic patients: perturbation of SREBP-controlled lipogenesis in drug-related metabolic adverse effects? Mol Psychiatry. 2008 Jan 15. [Epub ahead of print] Le Hellard S, Mühleisen TW, Djurovic S, Fernø J, Ouriaghi Z, Mattheisen M, Vasilescu C, Raeder MB, Hansen T, Strohmaier J, Georgi A, Brockschmidt FF, Melle I, Nenadic I, Sauer H, Rietschel M, Nöthen MM, Werge T, Andreassen OA, Cichon S, Steen VM. Polymorphisms in SREBF1 and SREBF2, two antipsychotic-activated transcription factors controlling cellular lipogenesis, are associated with schizophrenia in German and Scandinavian samples. Mol Psychiatry. 2008 Oct 21. [Epub ahead of print] Lybæk H, Meza-Zepeda LA, Kresse SH, Høysæter T, Steen VM, Houge G. Array-CGH fine mapping of minor and cryptic HR-CGH detected genomic imbalances in 80 out of 590 patients with abnormal development. Eur J Hum Genet. 2008; 16: 1318-1328. Lyng H, Lando M, Brøvig RS, Svendsrud DH, Johansen M, Galteland E, Brustugun OT, Meza-Zepeda LA, Myklebost O, Kristensen GB, Hovig E, Stokke T. GeneCount: genome-wide calculation of absolute tumor DNA copy numbers from array comparative genomic hybridization data. Genome Biol. 2008; 9: R86. Epub 2008 May 23. Meza-Zepeda LA, Noer A, Dahl JA, Micci F, Myklebost O, Collas P. High-resolution analysis of genetic stability of human adipose tissue stem cells cultured to senescence. J Cell Mol Med. 2008; 12: 553-563. Nilsen AJ, Landin MA, Haug KH, Fonnum F, Berger U, Osmundsen H. Comparative hepatic gene expression profiling of rats treated with 1H,1H,2H,2H-heptadecafluorodecan-1-ol or with pentadecafluorooctanoic acid. Physiol Genomics. 2008; 34: 285-303. Epub 2008 Jun 10. Nygaard V, Liu F, Holden M, Kuo WP, Trimarchi J, Ohno-Machado L, Cepko CL, Frigessi A, Glad IK, Wiel MA, Hovig E, Lyng H. Validation of Oligoarrays for quantitative exploration of the transcriptome. BMC Genomics. 2008 May 30; 9: 258 Nygaard V, Hovig E. Cell sampling and global nucleic acid amplification. SEB Exp Biol Ser. 2008; 61: 17-36. Nørsett KG, Laegreid A, Kusnierczyk W, Langaas M, Ylving S, Fossmark R, Myhre S, Falkmer S, Waldum HL, Sandvik AK. Changes in gene expression of gastric mucosa during therapeutic acid inhibition. Eur J Gastroenterol Hepatol. 2008; 20: 613-623. Olsvik PA, Lie KK, Mykkeltvedt E, Samuelsen OB, Petersen K, Stavrum AK, Lunestad BT. Pharmacokinetics and transcriptional effects of the anti-salmon lice drug emamectin benzoate in Atlantic salmon (Salmo salar L.). BMC Pharmacology 2008; 8: 16 Roman E, Meza-Zepeda LA, Kresse SH, Myklebost O, Vasstrand EN, Ibrahim SO. Chromosomal aberrations in head and neck squamous cell carcinomas in Norwegian and Sudanese populations by array comparative genomic hybridization. Oncol Rep. 2008; 20: 825-843. Slagsvold JE, Pettersen CH, Follestad T, Krokan HE, Schønberg SA. The Antiproliferative Effect of EPA in HL60 Cells is Mediated by Alterations in Calcium Homeostasis. Lipids. 2008 Nov 20. [Epub ahead of print] Vik-Mo AO, Birkenaes AB, Fernø J, Jonsdottir H, Andreassen OA, Steen VM. Increased expression of lipid biosynthesis genes in peripheral blood cells of olanzapine-treated patients. Int J Neuropsychopharmacol. 2008; 11: 679-684.
2007 1. Benson M, Steenhoff Hov DA, Clancy T, Hovig E, Rudemo M, Cardell LO. Connectivity can be used to identify key genes in DNA microarray data: a study based on gene expression in nasal polyps before and after treatment with glucocorticoids. Acta Otolaryngol. 2007 Oct;127(10):1074-9. Bruland T, Anderssen E, Doseth B, Bergum H, Beisvag V, Laegreid A. “Optimization of cDNA microarrays procedures using criteria that do not rely on external standards”. BMC Genomics. 2007 Oct 18;8(1):377 Cekaite L, Peng Q, Reiner A, Shahzidi S, Tveito S, Furre IE, Hovig E. Mapping of oxidative stress responses of human tumor cells following photodynamic therapy using hexaminolevulinate. BMC Genomics. 2007 Aug 13;8:273. Cekaite L, Furset G, Hovig E, Sioud M. Gene expression analysis in blood cells in response to unmodified and 2'-modified siRNAs reveals TLR-dependent and independent effects. J Mol Biol 2007; 365: 90-108. Cekaite L, Hovig E, Sioud M. Protein arrays: a versatile toolbox for target identification and monitoring of patient immune responses. Methods Mol Biol. 2007; 360: 335-348. Erlandsen SE, Fykse V, Waldum HL, Sandvik AK. Octreotide induces apoptosis in the oxyntic mucosa. Mol Cell Endocrinol 2007; 264 :188-196. Francis P, Namlos HM, Muller C, Eden P, Fernebro J, Berner JM, Bjerkehagen B et al. Diagnostic and prognostic gene expression signatures in 177 soft tissue sarcomas: hypoxia-induced transcription profile signifies metastatic potential, BMC Genomics, 2007; 8: 73. Gidskehaug L, Anderssen E, Flatberg A, Alsberg BK. A framework for significance analysis of gene expression data using dimension reduction methods. BMC Bioinformatics 2007; 8: 346. Halvorsen OJ, Rostad K, Oyan AM, Puntervoll H, Bo TH, Stordrange L, Olsen S et al. Increased expression of SIM2-s protein is a novel marker of aggressive prostate cancer. Clin Cancer Res 2007 13: 892-897. Håvik B, Røkke H, Dagyte G, Stavrum AK, Bramham CR, Steen VM. Synaptic activity-induced global gene expression patterns in the dentate gyrus of adult behaving rats: induction of immunity-linked genes. Neuroscience 2007; 148: 925-936. Kleivi K, Lind GE, Diep CB, Meling GI, Brandal LT, Nesland JM, Myklebost O et al. Gene expression profiles of primary colorectal carcinomas, liver metastases, and carcinomatoses. Mol Cancer 2007; 6: 2. Liu F, Jenssen TK, Trimarchi J, Punzo C, Cepko CL, Ohno-Machado L, Hovig E, Kuo WP. Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates. BMC Genomics. 2007 Jun 7;8:153. Osmundsen H, Landin MA, From SH, Kolltveit KM, Risnes S. Changes in gene-expression during development of the murine molar tooth germ. Arch Oral Biol. 2007;52:803-13. Petersen K, Oyan AM, Rostad K, Olsen S, Bo TH, Salvesen HB, Gjertsen BT et al. Comparison of nucleic acid targets prepared from total RNA or poly(A) RNA for DNA oligonucleotide microarray hybridization. Anal Biochem 2007; 366: 46-58. Rostad K, Mannelqvist M, Halvorsen OJ, Oyan AM, Bo TH, Stordrange L, Olsen S et al. ERG upregulation and related ETS transcription factors in prostate cancer. Int J Oncol 2007; 30: 19-32. Raa A, Stansberg C, Steen VM., Bjerkvig R, Reed RK, Stuhr, LE. Hyperoxia retards growth and induces apoptosis and loss of glands and blood vessels in DMBA-induced rat mammary tumors. BMC Cancer 2007; 7: 23. Stansberg C, Vik-Mo AO, Holdhus R, Breilid H, Srebro B, Petersen K, Jorgensen HA et al. Gene expression profiles in rat brain disclose CNS signature genes and regional patterns of functional specialisation. BMC Genomics 2007; 8: 94. Zangani MM, Frøyland M, Qiu1 GY, Meza-Zepeda LA, Kutok JL, Thompson KM, Munthe LA, Bogen B. Lymphomas can develop from B cells chronically helped by idiotype-specific T cells. J Exp Med 2007; 204: 1181-1191.
2006 Afset JE, Bruant G, Brousseau R, Harel J, Anderssen E, Bevanger L et al. Identification of virulence genes linked with diarrhea due to atypical enteropathogenic Escherichia coli by DNA microarray analysis and PCR. J Clin Microbiol 2006; 44: 3703-3711. Beisvag V, Junge FK, Bergum H, Jolsum L, Lydersen S. Gunther CC, Ramampiaro H et al. GeneTools--application for functional annotation and statistical hypothesis testing. BMC Bioinformatics 2006 7: 470. Beisvag V, Lehre PK, Midelfart H, Aass H, Geiran O, Sandvik AK, Laegreid A et al. Aetiology-specific patterns in end-stage heart failure patients identified by functional annotation and classification of microarray data. Eur J Heart Fail 2006; 8: 381-389. Berner JM, Müller CR, Holden M, Wang J, Hovig E, Myklebost O. Sampling effects on gene expression data from a human tumor xenograft Scand J Lab Animal Science 2006; 33: 17-30 Boe S, Hovig, E. Photochemically induced gene silencing using PNA-peptide conjugates. Oligonucleotides 2006; 16: 145-157. Dysvik B, Vasstrand EN, Lovlie R, Elgindi OA, Kross KW, Aarstad HJ, Johannessen AC et al. Gene expression profiles of head and neck carcinomas from Sudanese and Norwegian patients reveal common biological pathways regardless of race and lifestyle. Clin Cancer Res 2006; 12: 1109-1120. Ferno J, Skrede S, Vik-Mo AO, Havik B, Steen VM. Drug-induced activation of SREBP-controlled lipogenic gene expression in CNS-related cell lines: marked differences between various antipsychotic drugs. BMC Neurosci 2006; 7: 69. Gidskehaug L, Anderssen E, Alsberg BK. Cross model validated feature selection based on gene clusters. Chemometrics and Intelligent Laboratory Systems 2006; 84: 172-176. Kuo WP, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple ME et al. A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies. Nat Biotechnol 2006; 24: 832-840. Meza-Zepeda LA, Kresse SH, Barragan-Polania AH, Bjerkehagen B, Ohnstad HO, Namlos HM, Wang J et al. Array comparative genomic hybridization reveals distinct DNA copy number differences between gastrointestinal stromal tumors and leiomyosarcomas. Cancer Res 2006; 66: 8984-8993. Myhre S, Tveit H, Mollestad T, Laegreid A. Additional gene ontology structure for improved biological reasoning. Bioinformatics 2006; 15: 2020-2027. Nygaard V, Hovig E. Options available for profiling small samples: a review of sample amplification technology when combined with microarray profiling. Nucleic Acids Res 2006; 34: 996-1014. Oyan AM, Bo TH, Jonassen I, Gjertsen BT, Bruserud O, Kalland KH. cDNA microarray analysis of non-selected cases of acute myeloid leukemia demonstrates distinct clustering independent of cytogenetic aberrations and consistent with morphological signs of differentiation. Int J Oncol 2006; 28: 1065-1080. Prasmickaite L, Cekaite L, Hellum M, Hovig E, Hogset A, Berg K. Transcriptome changes in a colon adenocarcinoma cell line in response to photochemical treatment as used in photochemical internalisation (PCI). FEBS Lett 2006; 580: 5739-5746. Raeder MB, Ferno J, Glambek M, Stansberg C, Steen VM. Antidepressant drugs activate SREBP and up-regulate cholesterol and fatty acid biosynthesis in human glial cells. Neurosci Lett 2006; 395: 185-190. Raeder MB, Ferno J, Vik-Mo AO, Steen VM. SREBP activation by antipsychotic- and antidepressant-drugs in cultured human liver cells: relevance for metabolic side-effects? Mol Cell Biochem 2006; 289: 167-173. Sakariassen PO, Prestegarden L, Wang J, Skaftnesmo KO, Mahesparan R, Molthoff C, Sminia P et al. Angiogenesis-independent tumor growth mediated by stem-like cancer cells. Proc Natl Acad Sci USA 2006; 103: 16466-16471. Sandvik AK, Alsberg BK, Norsett KG, Yadetie F, Waldum HL, Laegreid A. Gene expression analysis and clinical diagnosis. Clin Chim Acta 2006; 363: 157-164. Shi L, Reid LH, Jones WD, Shippy R, Warrington JA, Baker SC, Collins PJ et al. The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat Biotechnol 2006; 24: 1151-1161. Sivertsen EA, Galteland E, Mu D, Holte H, Meza-Zepeda L, Myklebost O, Patzke S et al. Gain of chromosome 6p is an infrequent cause of increased PIM1 expression in B-cell non-Hodgkin's lymphomas. Leukemia 2006; 20: 539-542. Tovar C, Rosinski J, Filipovic Z, Higgins B, Kolinsky K, Hilton H, Zhao X et al. Small-molecule MDM2 antagonists reveal aberrant p53 signaling in cancer: implications for therapy, Proc Natl Acad Sci USA 2006; 103: 1888-1893. Wibrand K, Messaoudi E, Havik B, Steenslid V, Lovlie R, Steen VM et al. Identification of genes co-upregulated with Arc during BDNF-induced long-term potentiation in adult rat dentate gyrus in vivo. Eur J Neurosci 2006; 23: 1501-1511.
Bjerkehagen B, Myklebost O Diagnostisk Molekylærbiologi: Ben- og bløtvevsvulster. Tidsskr. Nor. Lægeforening 2005; 125: 3286-3289. Ferno J, Raeder MB, Vik-Mo AO, Skrede S, Glambek M, Tronstad KJ, Breilid H et al. Antipsychotic drugs activate SREBP-regulated expression of lipid biosynthetic genes in cultured human glioma cells: a novel mechanism of action? Pharmacogenomics J 2005; 5: 298-304. Galteland E, Sivertsen EA, Svendsrud DH, Smedshammer L, Kresse SH, Meza-Zepeda LA, Myklebost O et al. Translocation t(14;18) and gain of chromosome 18/BCL2: effects on BCL2 expression and apoptosis in B-cell non-Hodgkin's lymphomas. Leukemia 2005; 19: 2313-2323. Gulliksen A, Solli LA, Drese KS, Sorensen O, Karlsen F, Rogne H, Hovig E et al. Parallel nanoliter detection of cancer markers using polymer microchips. Lab Chip 2005, 5: 416-420. Halvorsen OJ, Oyan AM, Bo TH, Olsen S, Rostad K, Haukaas SA, Bakke AM et al. Gene expression profiles in prostate cancer: association with patient subgroups and tumour differentiation. Int J Oncol 2005; 26: 329-336. Hjelmervik TO, Petersen K, Jonassen I, Jonsson R, Bolstad AI. Gene expression profiling of minor salivary glands clearly distinguishes primary Sjogren's syndrome patients from healthy control subjects. Arthritis Rheum 2005; 52: 1534-1544. Hofsli E, Thommesen L, Yadetie F, Langaas M, Kusnierczyk W, Falkmer U, Sandvik AK et al. Identification of novel growth factor-responsive genes in neuroendocrine gastrointestinal tumour cells. Br J Cancer 2005; 92: 1506-1516. Jenssen TK, Hovig E. Gene-expression profiling in breast cancer. Lancet 2005; 365: 634-635. Kresse SH, Berner JM, Meza-Zepeda LA, Gregory SG, Kuo WL, Gray JW, Forus A et al. Mapping and characterization of the amplicon near APOA2 in 1q23 in human sarcomas by FISH and array CGH. Mol Cancer 2005; 4: 39. Lyng H, Landsverk KS, Kristiansen E, DeAngelis PM, Ree AH, Myklebost O, Hovig E et al. Response of malignant B lymphocytes to ionizing radiation: gene expression and genotype. Int J Cancer 2005; 115: 935-942. Norsett KG, Laegreid A, Langaas M, Worlund S, Fossmark R, Waldum HL, Sandvik AK. Molecular characterization of rat gastric mucosal response to potent acid inhibition. Physiol Genomics 2005; 22: 24-32. Nygaard V, Holden M, Loland A, Langaas M, Myklebost O, Hovig E. Limitations of mRNA amplification from small-size cell samples. BMC Genomics 2005; 6: 147. Oyan AM, Bo TH, Jonassen I, Ulvestad E, Gjertsen BT, Kalland KH, Bruserud O. CD34 expression in native human acute myelogenous leukemia blasts: differences in CD34 membrane molecule expression are associated with different gene expression profiles. Cytometry B Clin Cytom 2005, 64: 18-27.
2004 Bø TH, Dysvik B, Jonassen I. LSimpute: accurate estimation of missing values in microarray data with least squares methods. Nucl Acids Res 2004; 32: e34. Flikka K, Yadetie F, Lægreid A, Jonassen I. XHM: A system for detection of potential cross hybridizations in DNA microarrays. BMC Bioinformatics 2004; 5: 117.
Jonassen I, Dysvik B. Analysis of gene expression data using J-Express. “Current Protocols in Bioinformatics” Unit I, John Wiley, 2004. Lyng H, Badiee A, Svendsrud DH, Hovig E, Myklebost O, Stokke T. Profound influence of microarray scanner characteristics on gene expression ratios: analysis and procedure for correction. Nilbert M, Meza-Zepeda LA, Francis P, Berner JM, Namlos HM, Fernebro J, Myklebost O. Lessons from genetic profiling in soft tissue sarcomas. Acta Orthop Scand Suppl. 2004; 75: 35-50. Nørsett K, Lægreid A, Midelfart H, Yadetie F, Falkmer S, Grønbeck J, Waldum HL, Komorowski J Sandvik AK. Gene expression based classification of gastric carcinoma. Cancer Lett. 2004; 210: 227-237. Tveit H, Mollestad T, Lægreid A. The Alignment of Medical Subject Headings to the Gene Ontology and its Application in Gene Annotation. Fourth International Conference on Rough Sets and Current Trends in Computing 2004. Tsumoto S et al (eds) Lecture Notes in Artificial Intelligence 3066, ISBN 3-540-22117-4, Springer Verlag. Heidelberg, Germany, pp 798-804, 2004 Wang J, Meza-Zepeda LA, Kresse SH, Myklebost O. M-CGH: analysing microarray-based CGH experiments. BMC Bioinformatics. 2004;5 :74. Yadetie F, Sandvik AK, Bergum H, Nørsett K, Lægreid A. Miniaturized fluorescent RNA dot blot method for rapid quantitation of gene expression. BMC Biotechnology 2004; 4:12.
2003 Badiee A, Eiken HG, Steen VM, Løvlie R. Evaluation of five different cDNA labeling methods for microarrays using spike controls. BMC Biotechnology 2003; 3: 23. Hvidsten TR, Lægreid A, Komorowski J. Learning rule-based models from gene expression time profiles annotated using Gene Ontology. Bioinformatics 2003; 19: 1116-1123. Lægreid A, Hvidsten T, Midelfart H, Komorowski J, Sandvik AK. Predicting Gene Ontology Biological Process from Temporal Gene Expression Patterns. Genome Research. 2003; 13: 965-979. Malde K, Coward E, Jonassen I: Fast Sequence Clustering Using A Suffix Array Algorithm. Bioinformatics 2003: 19: 1221-1226. Nygaard V, Loland A, Holden M, Langaas M, Rue H, Liu F, Myklebost O, Fodstad Ø, Hovig E, Smith-Sørensen B. Effects of mRNA amplification on gene expression ratios in cDNA experiments estimated by analysis of variance. BMC Genomics 2003; 4: 11. Wang J, Bø TH, Jonassen I, Myklebost O, Hovig E. Tumour classification and marker gene prediction by feature selection and fuzzy- c-means clustering using microarray data. BMC Bioinformatics 2003, 4: 60. Wang J, Myklebost O, Hovig E. MGraph: graphical models for microarray data analysis. Bioinformatics. 2003; 19: 2210-2211. Yadetie F, Lægreid A, Bakke, Kusnierczyk, Waldum, Sandvik AK. DNA microarray analysis of liver gene expression in rats after longterm treatment with ciprofibrate. Physiological Genomics 2003; 15: 9-19.
2002 Bø TH, Jonassen I. New feature subset selection procedures for classification of expression profiles. Genome Biol 2002; 3: 0017.1-0017.11. Conklin D, Jonassen I, Aasland R, Taylor WR. Association of nucleotide patterns with gene function classes: Application to human 3’ untranslated sequences. Bioinformatics 2002; 18: 182-189. Jenssen TK, Langaas M, Kuo WP, Smith-Sørensen B, Myklebost O, Hovig E. Analysis of repeatability in spotted cDNA microarrays. Nucl Acids Res 2002; 30: 3235-3244 Jenssen TK, Kuo WP, Stokke T, Hovig E. Associations between gene expressions in breast cancer and patient survival. Hum Genet 2002; 111: 411-420. Midelfart H, Komorowski J, Nørsett K, Yadetie F, Sandvik AK, Lægreid A. Learning Rough Set Classifiers from Gene Expression and Clinical Data. Fundamenta Informaticae. 53: 155-183, 2002. Wang J, Nygaard V, Smith-Sørensen B, Hovig E, Myklebost O. MArray: analysing single, replicated or reversed microarray experiments. Bioinformatics 2002; 18: 1139-1140. Wang J, Delabie J, Aasheim HC, Smeland E, Myklebost O. Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study. BMC Bioinformatics 2002; 3: 36.
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